Basic Information | |
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Taxon OID | 3300019879 Open in IMG/M |
Scaffold ID | Ga0193723_1003932 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5200 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.987 | Long. (o) | -107.0038 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000395 | Metagenome / Metatranscriptome | 1186 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193723_10039324 | F000395 | GAGG | MDVLETWLGEYNGRGRPAIPLGSKGEAGGAQLRLKYHPTPDTIAILHLVAVLRDGQPAIEVKSFAGPVTEASVEAGLWASTQLGRRP |
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