NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193723_1041865

Scaffold Ga0193723_1041865


Overview

Basic Information
Taxon OID3300019879 Open in IMG/M
Scaffold IDGa0193723_1041865 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1359
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.987Long. (o)-107.0038Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006214Metagenome / Metatranscriptome378Y
F064573Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0193723_10418651F064573N/AVTLHPNVGRQFTDGAGAFAFAGAKPGTYVLSVRQIGYTPLDTQVVVGGDSTTIMRIALRHLAIELPPVTIAAGQCTNPGRPDSTDSVLLAVFDQLQENARRFELLADSYPFRYGLQITMREVNQRGDTGRPVVQTLRFTSNDNHPYAVGRVVEPAWGPWGSPDNTVVIHSADLQDLGNADFIANHCFRLAGRDTVGGETLVRIDFEPATRVRSADMAGAAYLDSVTYELRYTTTWLTRPERSSLISVRSMNFRTRFRNIARGVPLQDSATVITTYRFGRQTKIDTQRTVEVRFSRQPPPP
Ga0193723_10418652F006214AGGAGGMALPLLLVLLQTTTAHPAAQTPVGSVAAWTLHFSGDIRWQQITPAGALLISTDGGLAGVDVERGLITWQKPELGGLPVDSVRTVEGSLLMEAAKPGLSLIFDPVTGTVLFDSRRLSLTRVVTRRVLPQTGTLI
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