NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193723_1044939

Scaffold Ga0193723_1044939


Overview

Basic Information
Taxon OID3300019879 Open in IMG/M
Scaffold IDGa0193723_1044939 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1305
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.987Long. (o)-107.0038Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024394Metagenome / Metatranscriptome206Y
F094274Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0193723_10449392F024394N/AMKDIHEVLRRKQARYAQLAKQIEMLQQAAEKLREVAPLLTENDDDDSAILAEVDDDIVQPSAMAAKAASATSNNQTAPAKPVRPPRWP
Ga0193723_10449393F094274N/AMTLQALLVSKDDETSALLGSVLCEFGLGVQCCSYLDAICRVTEQKFDAVIVDYDDPHSAALVLQNASQASSG

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