Basic Information | |
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Taxon OID | 3300019882 Open in IMG/M |
Scaffold ID | Ga0193713_1002884 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5568 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9827 | Long. (o) | -107.0102 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F017119 | Metagenome / Metatranscriptome | 242 | N |
F071335 | Metagenome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193713_10028841 | F071335 | GGAG | MNASSLAAEPVVAVAKRILSARAAEVAPYARLYPLLLADMGEIMAEWDRKTDELPWSELEHADRQNNLAGVITRVIDCAMSDAPREARVNALVEAACAHGESRRKQGVDVPSLFTEYDVVRTATWRQLQTLTGPTTSYNAIFVIDGLLSVASRGTVLGYHRKEMEANGLWATQREELRKTVRS |
Ga0193713_10028842 | F017119 | AGGAG | MITDQAPANQSKPGSGQEPTNVERRTLIGAGLAALLTAACSSPTENRAQRLSSSGLVTAEDRDEGSDEGKSVPNDPFILLLKGLYQPVPKGSGQHNFGLTTVDLDDGSYSKTRIYPIFGIRGSTHQDKSIGTFYVSPGKGLCAYDLPGGAIAMEFIRPGGKFPVVVPDGMGGQYLEGYLPLTILEATGIYRAFAGGHNLMVDKLHQLVAGAPFAGFPSSGYDELCFCMIFQHSDSFPV |
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