NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193747_1000009

Scaffold Ga0193747_1000009


Overview

Basic Information
Taxon OID3300019885 Open in IMG/M
Scaffold IDGa0193747_1000009 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)248640
Total Scaffold Genes203 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)173 (85.22%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8925Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000678Metagenome / Metatranscriptome940Y
F000783Metagenome / Metatranscriptome893Y
F000923Metagenome / Metatranscriptome833Y
F003414Metagenome / Metatranscriptome488Y
F003732Metagenome / Metatranscriptome471Y
F081417Metagenome / Metatranscriptome114Y
F093617Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0193747_1000009106F000678AGGAMDKFEEFGKRVDEEFARIKSIKNFEDFGKRVDEELARVKSFVKEEVAPETEKRTAQFLREVSEKFSEAAAWIEARNAARNAQNGQHPPSAQPPQNPRSS
Ga0193747_1000009174F000923GAGMKTKDENRKWMWMFLTALVSLQMYFVWELLAVFALFAVGFAAIAFAVGSLYMLHRGWALAVERIADSRHPVMVAMRQGIYTIEDVARRTIRRPGSAPAR
Ga0193747_1000009191F000783GAGGMVAAAGVWKKKRDDLKTKRNLLFETYAKDPQNFHLAREIKEIDDEIAEYTQHVEQERRAEQRAASPAGKLVTSPK
Ga0193747_10000094F081417AGGAGMDKNPTPRSTWWGRADWFVFVPWFLVFASFWIYLFGPDRAPWTEAMHEFYGMRRTAEIHTPWLMFGSLLIILYSFTLFLRRRLLFGRVARSWTIAIAILFIVLAAATGLAALATYASSFL
Ga0193747_100000960F093617GGAGMTSTLNFGDSPEAALSSTDPEQLYTREKKFLDERRVLPLVALPEYIGLSQNVRDWRSARSGEWPLADVWLDLVEPSPAETGNSNAPGTTVAQSPVASPGAKP
Ga0193747_100000966F003732GGGGGMSMKEKLLFVWLLVVVAFSFVFRHFWASAVYALGRAVALNLVSLPGLAKLAAGICGVGFL
Ga0193747_100000981F003414GGTGGMRKRPAIPWDTEVQVRPVTQPRTAEASSVPDDLVPELQLELPPFPGQLTSVRTAPQRPRVSTPPSAATENDAEKLEAPTIALQVTPQESAVAQQQTKQSLGIAEKNLESARGKNLNAAQSDLASKIRGFIKDAREAAQIGDWSRARSLAKKAQVLSEELAGSL
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