NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193747_1000046

Scaffold Ga0193747_1000046


Overview

Basic Information
Taxon OID3300019885 Open in IMG/M
Scaffold IDGa0193747_1000046 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81342
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)59 (78.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8925Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000159Metagenome / Metatranscriptome1863Y
F000529Metagenome / Metatranscriptome1047Y
F001792Metagenome / Metatranscriptome633Y
F029066Metagenome / Metatranscriptome189Y
F043847Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0193747_100004627F000159AGGAMKPNSFLRSVALLTAIALAMPAFAKPFAKTINISQTAKLGKSELKAGEYRLEIEGNKATVQKGKQVVAESEGRWEDRSAKSAYDSLLLGENGQVREVRFAGQTRVFVFSE
Ga0193747_100004641F029066GGAGMYSAPRNIRAVVLLFIMSSLSGTVALPQAVKFIRRAADPLPLANMLVGRASCTRDSGSAVPAPHAATAAGSDLGPPCDTPPVNVPSVNPCNASSPAQIGCHAPRDLVQEDLATMGKSGQKILGARDRVLEILQTENACSAWFREKDSNPANTFRTLSFALDRKGEEFVLESKNPGDMNIFRSPYVARVFQGDGSYATITINMTGAFFSPMARVVEIQKEGGFWSLRGVRVLGVGPYAGDSLRAQILALLHEFGHLVDLLPTDEGDQDGKSVQNTSEVLRFCRAEVESKAKRGALSAAR
Ga0193747_100004642F001792N/AMPQPRLFRFLLLAALAVIAGFLALAIAVPIEPQVSAPLIALFSPGLKLAESIMPETHKSMAWTFGWFLRIAIAANATFYFAIFALIAHFADRPRPK
Ga0193747_100004644F043847GGAGGMPWACRGFAVVFLAFGLSLISGKVAHTQDQSITSSTPMARPKVIPRLCGDRRPVPGPQRKSGSVREADRSDNRCAEVAFDRSATASLGPGDVRENANEDPVLEELKAMGEQGLVIERAREEVIGILEGQNRCAAWFQQAEPEVARKFQSLRYRIDESGPQYTLKLQNAAGGWLYQQPYVASSIEDASTGSTITINGKGAFFQLRSGVRIVPKDGGPGGLSASQLLHLDLYLGGTLDAQVTALLHEFSHVVGLLPADGGSGFGAELSTQNTQIVLHHCRGEVEAAGKHKGLFLNPGTGSFHVARGDKANF
Ga0193747_100004668F000529GAGGMFSAMLLAISVVALSQFALYYWRAVLAGVAAQPVSDRVLVAAQVENGRFTPQDFQTLAGLHNLTPDLFPNRSGLGLVRLYYRAIEGLDAFFANRIPIFSSWSERERIICSRYAAVQVDRRLQANLDLVASLHSC
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