NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193747_1000077

Scaffold Ga0193747_1000077


Overview

Basic Information
Taxon OID3300019885 Open in IMG/M
Scaffold IDGa0193747_1000077 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57201
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (80.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8925Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000173Metagenome / Metatranscriptome1777Y
F001983Metagenome / Metatranscriptome608Y
F015379Metagenome255Y
F016576Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0193747_100007723F016576GGAGGMKNSIKVIGLTCLLLGIPACLYADRAHDLAKLAAKQKAATGCNPASLNTQTCHAQFPTGCTDSAHRYDAYLNFLKDQVPGPALASTALLNGNDSQSLEGKIPKGLSSANHAKSAPALAGLGEGNIVTVIAYLYFVEDTSKGAHVKPPIGETANCKLQLPDSYDYHIGLGFDPALAQQILKTKPKPVFGKPGPIDKTSVVAEMTPHTRAPKWTFARVNSLQGQQVKVVGQLMIDNVHLNVNDDCSFPGATASCWRSTVWEIHPVTQFYVCNLKNKLCDQSSPDSAWTSLDNVP
Ga0193747_100007752F015379GAGVRPFIKCLYSDVLGSINRESLDREVLIDDLGHGRRGIAVEILMPLYFGGKETLK
Ga0193747_100007753F000173GGAGGMKTFEVQFRYRDRNEGTVESTVKVDASSLPGAVAKAAREFVKGLDRKQRFDMNKNGLEITAKSAGTTTEAQAQKSAETAAG
Ga0193747_100007754F001983AGGAMTRKNTWARLAAAVVLSLPLTACNDTKTQQQNEQLKAHVAELQKENGQLGNDLETITAARDALTKENEALKAEIKARKTRRSGAKAASRKRHRS

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