Scaffold Ga0193747_1000080

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0193747_1000080

Scaffold Ga0193747_1000080

Overview

Basic Information
Taxon OID	3300019885 Open in IMG/M
Scaffold ID	Ga0193747_1000080 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	55120
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (82.98%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8925	Long. (^o)	-106.9111	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002627	Metagenome / Metatranscriptome	542	Y
F016603	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_100008019	F002627	AGGAG	MTFPTYRTIRPLLALVLTFLMACAASAPALGQEKKVAQQNGVDNSKMGAYRALAQHVYADFQKGDLAAAALMAKVLERVWDKAEDYGGDTALSKTNHGLFEQIDKAMDDFISLITEAKGKPPDPPKVKAAFSAYLEKLKLAD
Ga0193747_10000808	F016603	N/A	LNLSDYSPGLASIPLWYFKVEGKLWVDKQDFGWIKVDGQVTQSFSMGLFVARVQRGSHIILEQTCVGDAVWVPKRFEVRASTRILFLKNFDMDRILTYSDYRPAADGPYSVSK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.