NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193747_1002530

Scaffold Ga0193747_1002530


Overview

Basic Information
Taxon OID3300019885 Open in IMG/M
Scaffold IDGa0193747_1002530 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4627
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8925Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007952Metagenome / Metatranscriptome342N
F009258Metagenome / Metatranscriptome320Y

Sequences

Protein IDFamilyRBSSequence
Ga0193747_10025304F007952GGAGGLKEALARLDALMNRLVEADQTGSGIDPLRVANELGQIRQLLAEAPAVVRAKGGQKHFRCEACGTISHGERQPERCPTCGGRKFFAADIEQPFVESGAG
Ga0193747_10025306F009258N/AMRLVPLVLFVFALLGGAVAAIFAPIYLDLFRRELSRADELEEIAGKAGLRFSKNDPAYPGSTAFRYPFELFSRGIEQTCENFITGSIDGVDVVAFDFLYRLRLDSDDEPREGARSEAIRYSCALATVDGERPHVVIEPRSAALDARADGEPVRLEWGDFNARYRVISPDRGFATALLDLSLMAWLVDEAPDLPLTWEIQRDQVLCRAPSLGPDQVAAFAKALAEFAQRIGRGASD
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