NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193727_1002278

Scaffold Ga0193727_1002278


Overview

Basic Information
Taxon OID3300019886 Open in IMG/M
Scaffold IDGa0193727_1002278 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8082
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030204Metagenome / Metatranscriptome186Y
F032974Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0193727_10022783F030204AGGAGGMEPQRLGFASSLLAGIGILTTSFSLSWGIWSPYHPVSYYINHHAVFIAATGIGLLCSLAINVSLKRRIDVLESAVSRLTGGK
Ga0193727_10022785F032974GGAGGMPSKNRRTCIRIAAITALALHSAIAFGQEGGSAPMRLGERDRSKPVPTKAETIAAWQKRQGTINTFRFAWTEQQTHPRGWLSNPRYPERERSAIPGILIDRSYVVAKTLAVSGNKMRYSFELDRKEEPDGVDVIAPQGGNSGLGVRRHYSYVSVFDGQTGAVRLNSFLDHPPGTLLRGTANVDAQDLDVRPILMAFRPLDAAMGHRLIDRAVTNLSRTFYRGKSTFLLEEQHDPSGWKTILWIEPERNFLVSRYMVSFEQKETVDIDIDYVHDARWGWIPSGWRVTEMLSDGSKRLVAVAKVTSYSINAPIGTEEFR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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