NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193727_1003541

Scaffold Ga0193727_1003541


Overview

Basic Information
Taxon OID3300019886 Open in IMG/M
Scaffold IDGa0193727_1003541 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6497
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002821Metagenome / Metatranscriptome528Y
F020047Metagenome226Y

Sequences

Protein IDFamilyRBSSequence
Ga0193727_10035413F002821GGAMNTAKRSPVRVSLRVLVLASALVLSACLRSTEPQPSLLQLNGSWNYTGIQTGPVRESLSGTLTISAESGTSFQGRLDLVGVNSQTGESRVLGGLVSGSENSSSVVDFDANVESTPRRHVGQMVADTITGTWIGSSPDGTMSSGTFRVERETR
Ga0193727_10035415F020047AGTAGGVSSLRRTLSGGSTIAAISLALVLFAVPLAAQKTQLTVTGGTITFPAPTAVDYIAGFIDSSTGATFAINSQNGVQRTTMISIRATSASLGNGKLIGDLQWRRSDLATWNDVTLTDAQVEQRIVVNKGLNDPWSNTIFFRMALSWTSDAPATYSANYVITLSQTVP
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