NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193729_1003476

Scaffold Ga0193729_1003476


Overview

Basic Information
Taxon OID3300019887 Open in IMG/M
Scaffold IDGa0193729_1003476 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7731
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9225Long. (o)-106.9538Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014334Metagenome / Metatranscriptome264Y
F039303Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0193729_10034764F039303AGGMHVLGTYRPFDTLPHAFFDAMALMVAASLLLAIAAAARTIWLCARPTGATKPGVGQSPVSSSWADSLLLLAVAMSWYTVAVGWTAQLVCYPIYADMSAHGAQAFHAYSNGYLSRWPIAFGLPIGAMCLSWATLLWVPLRNVPRRLVWVIVGLCLAFAVVTPPAAIAQGHMFSEGFSQDQYARLMLWEDFRTAIFTLIGVLALVVMRWRLMSTESRSA
Ga0193729_10034769F014334N/AMKMKITPILIGILLATAAFLLAQALSPNKRADLSASPSQPRSDDVGKRAPETCDPQTIAKAVKGYTCVVKTKSGSVAWRVEAVISTESRTFRVVKDLKSGLYVSDDMGKHSHESAKKENLCQSPDYSNQRGNLTSVTWRLPLGYPRSLNGKNGFPNQDSDFVILEDDGIRQVVSGAASKYFISSSEAGKMSDYMSYGFDGEFGGIDAGCNGNGMASLRCVAQ
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