Scaffold Ga0193729_1018964

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193729_1018964

Scaffold Ga0193729_1018964

Overview

Basic Information
Taxon OID	3300019887 Open in IMG/M
Scaffold ID	Ga0193729_1018964 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2999
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9225	Long. (^o)	-106.9538	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000753	Metagenome / Metatranscriptome	906	Y
F006362	Metagenome / Metatranscriptome	375	Y
F101588	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193729_10189642	F101588	GAG	MSSIEIETEPITRVWEIFDNQRGLSNSVMNSAAFANFLLLKERI
Ga0193729_10189645	F006362	AGCAGG	MSTGASSSATLPISAFPEGVDVHWETQRGVVWNEREQTREEHEFVYEISWIEELGLWRSFLRSHHKVNG
Ga0193729_10189646	F000753	GGA	MITVKASQKFFTYAEVTNLTGICAEHLENFAKRHRLGFIARTTETQGNHTDHWFFRPWDLMFLAMLFSRCAH

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