Scaffold Ga0193751_1000115

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193751_1000115

Scaffold Ga0193751_1000115

Overview

Basic Information
Taxon OID	3300019888 Open in IMG/M
Scaffold ID	Ga0193751_1000115 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	72371
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	59 (88.06%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8924	Long. (^o)	-106.9111	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F051804	Metagenome / Metatranscriptome	143	Y
F069867	Metagenome	123	Y
F102903	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_10001154	F051804	GAGG	MAKQVVATTLMIEILGPKDASAKRIRFVEDILRNCIKTLDKDFRKSRIPQMKGFSLRPEKDLRKRRER
Ga0193751_10001155	F069867	AGGAGG	MSQRIYEYPEVIGKTVAKVTVANESDWHNISVKFTDNTAIHFSIRAFMQFEPEHIDWTTGNGKILRSYPFIRQTEG
Ga0193751_10001157	F102903	AGGA	MPKPWVELIEARGRTVKRMNVAYDEEYVAVEVEFEDGHSMNVDIIPAVQIRPQFQHVGTGDARIIRNYNSRISVAGGLKIRSR

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