NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193751_1000216

Scaffold Ga0193751_1000216


Overview

Basic Information
Taxon OID3300019888 Open in IMG/M
Scaffold IDGa0193751_1000216 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51088
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (74.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000065Metagenome / Metatranscriptome2788Y
F066217Metagenome127Y
F075880Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0193751_100021614F066217GGAGGMKRPRVSSFALCAGLTLTFALGIVPPLTMAQDARPIVGDWSGTLNPGAQPKKRIVVHISAAQDGSLNGTIDYPDQDTSGIQLTAITYTESVLHFESTPSLTVYDGTMNQDHSTITGTMKQAGASLNLVLKRTP
Ga0193751_100021622F000065AGGAGLFVKGNAQAFFETSTGKPMNKSIAKLRKSPQPPLSHPGATPDSDRAKPAPLADPAANESELSPGDRVEGLGNFGIPTGQLGTVEQSNEEDAVVKWDDDGRMRLHQPWLKKV
Ga0193751_100021638F075880GGAGGVYDVELVRLICLDINNAKDDPQKEQELISLLQAVIREDQEEMRIRMAFLAKRYAAVISDAKAAD
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Institute for Fundamental Biomedical Research
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