NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193751_1000280

Scaffold Ga0193751_1000280


Overview

Basic Information
Taxon OID3300019888 Open in IMG/M
Scaffold IDGa0193751_1000280 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43511
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (57.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010257Metagenome / Metatranscriptome306Y
F017275Metagenome / Metatranscriptome241Y
F053237Metagenome / Metatranscriptome141Y
F091679Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0193751_100028010F091679GAGVLAIILFFLSLLSHREPWVLEYHCEASSEDFCSDGGHGAEKSFPSKQEAIDWIQGNYIYWPDTLRHGDVRMACVVTYLDGDDPDPITRLRKEVDCDTQANLDKNRGRDTRWSDRWSEQ
Ga0193751_100028034F053237GAGGMNNIGQPAQPNRELVECAIAEVLGIAQRQGITPADFVRMLDSGMRMSDFLTAMDGFTRADHTRDRDFS
Ga0193751_100028037F010257N/AMAKIIEFFVPSSFRKKATKWMPPEEYGKVIPFSLPQKKSA
Ga0193751_10002808F017275GAGVTLTQISSTFWGSYGASFIALLGFLLNGFLMYGAAQKLAGQREEQRVADQAWKKEHSAQANLRDVAIAALQAMGNSNEATVKGVQGQLLLIQAELQALRNRTGAFPKSK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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