NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193751_1005346

Scaffold Ga0193751_1005346


Overview

Basic Information
Taxon OID3300019888 Open in IMG/M
Scaffold IDGa0193751_1005346 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7218
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003242Metagenome / Metatranscriptome498Y
F004416Metagenome / Metatranscriptome439Y
F005245Metagenome / Metatranscriptome407Y

Sequences

Protein IDFamilyRBSSequence
Ga0193751_10053461F005245AGGAGVSLARMLGGSLLAHRAQQSQEWEGGLFDITIAVELQQMQAKDLSTTVERLTSVIGPKLARDRASFHINVKPAVAKLDVQPSLCFPERDAA
Ga0193751_100534611F003242AGAAGMWLEKLSFGVLRVLTPLGPRYLKPSFAQRLYLLWIFRNFQTLPVKVLSSHQQRLLESMCAENRFVSFGIGVDDAPLLGTLEQRPPAPSGALPPRRPSSSVTDSVAPFAADAQRR
Ga0193751_10053462F004416GGAGGMLLNSTGVIPRSRSAEEATLLRSKIDQLNKNTLILIAQAEKLIQESERLSPRVKALENPSTESKHS
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