Scaffold Ga0193743_1010004

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193743_1010004

Scaffold Ga0193743_1010004

Overview

Basic Information
Taxon OID	3300019889 Open in IMG/M
Scaffold ID	Ga0193743_1010004 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5466
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.883	Long. (^o)	-106.9108	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006450	Metagenome	373	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193743_10100045	F006450	GGTGG	MTTNQPSITIERIDHGVLPANDLGRAFRFWAGFMGAQLNFLTNMNARGLNREVPLIVFFTVANHAGFGIALQDFRLSTIPAKPLEGVVWAFEIAATDLSAAVEAAQTQKLVYDCVEYPAASPVRASLFVVDPDGNTIELCVRKDPSTIAGQGSVVPLRRISHVRIEVTDLDLARSWYGGTFGLIEADQVPGKDQLTLTASKSGQLLILRKVDKVAERSTQCFKGPHIDLRASADCYPEIFKRFDRRETYWGPEPYQIPWHEPDADTAYGYDPFGNRIQIGILAQRPMTFGNVTHATKPV

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