NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193728_1173277

Scaffold Ga0193728_1173277


Overview

Basic Information
Taxon OID3300019890 Open in IMG/M
Scaffold IDGa0193728_1173277 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)929
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9225Long. (o)-106.9538Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005428Metagenome / Metatranscriptome401Y
F066028Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0193728_11732772F005428N/AMIRVNRLSIALVCYVVLGALSWTTIADPKIRAGTLVILVLFAVKSVLRRNQVMHPDKDAE
Ga0193728_11732775F066028N/ALIQGSLRMTVIFQKAAIKIEKPEEFAKLQKAVEQAFLPERAEPFLKQLDRKGIRVRDFDGVLAQRLLETVVGEAELDGR

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