NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193755_1017928

Scaffold Ga0193755_1017928


Overview

Basic Information
Taxon OID3300020004 Open in IMG/M
Scaffold IDGa0193755_1017928 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2331
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9763Long. (o)-107.0041Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003589Metagenome478Y
F091784Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0193755_10179281F091784GGAGGMKSLVWVLMIATTLPLVAQEPADTAAAPPNGAEAQRLRTQIRQRWNEHVRSTLALSDDQTTKLQATEQRFEGRRQPIRARQREINQT
Ga0193755_10179282F003589AGGAGMNDDPTLDDGKLQEVARRLGARAADRLDVERTAQAVVTRLRTEPRADIRVLGGIRPAWLRIAAVLVMVVGAGVVALNVRVPLFTTPVPLATAGGELSELSGDELRAVLEAVGQPGGEQQEVSPQDLSLEDLSAPQLRALLKSLEG
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Institute for Fundamental Biomedical Research
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