NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193755_1022134

Scaffold Ga0193755_1022134


Overview

Basic Information
Taxon OID3300020004 Open in IMG/M
Scaffold IDGa0193755_1022134 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2103
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9763Long. (o)-107.0041Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054716Metagenome / Metatranscriptome139N
F064950Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0193755_10221342F054716AGGAGMTSTSAHQKFSGLLIVIGSLVFVCGGAFHPKINSSLGALGSSEFFQNFYMHIVHHGSWRLIHGMILAGPLMWLIGVGTFWSDRIGWTRMANTAMTLAATVWAVTFVFDGFVAPDIVRWMTPETGLHQLAVNQDAVIRLGLVSWLMLGFSMIAGGVGILFSSRSGGAKVLAWIGIPLGAWPFIAWATGTFLPGPFTSRYWNISAVSAAFWFLAVGVFLLVSAAPQNGIESEV
Ga0193755_10221344F064950AGGAGMSTLPGPQHLKRQRKNTLPIFYLFVFLATGTFTVAVKASQAAQEALSALGIVLAGGGIWSFLRFLKVADTHQRLINHEATSFAFVGSLFLTLAVGILQRLGFLSGVSLLVPALM

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