NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193732_1000008

Scaffold Ga0193732_1000008


Overview

Basic Information
Taxon OID3300020012 Open in IMG/M
Scaffold IDGa0193732_1000008 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)217448
Total Scaffold Genes212 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)137 (64.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9223Long. (o)-106.9536Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001578Metagenome / Metatranscriptome669Y
F006673Metagenome / Metatranscriptome367Y
F060318Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0193732_1000008113F001578AGGAGGMAWDGDDLAGQAEEVFERQQAAADARAHRGTSTVEERARSARFETLRLSRSKIMGQLSRATNPAHRTMLESALKSINDEMGEG
Ga0193732_1000008148F060318GAGGMRQEATTGDKAAALMRVASYLGRPQKFMPVGDARAEMRRTLELAAKGSVVLTTHGEPAAAVVPFTTLEDMRRALLHLLVEEMGSSLERSQERARSQRGDVPASSEEELEALVGDTVKKARRRNGKSSRKVSRG
Ga0193732_100000884F006673AGGMVSRAILLFTFLLFTFYFLLEPAHTQTPPASRGVIRLKVKFKTKELPRKRFFLIKGNLDDNRTLIDKIKQSAVMSRECYYRGKGASEALIKWLNENDCDSVYCREIEEKYLSGSDAVPEFQAAYNQGLREFKTPGLARHWLTVNLPADIRDGFYQQKQEVIDALVRQSEEASKTKVMSVMTDRKGTAYLTDIEPATYTISNLVGSESGKTSILWACEKEVKAVDLIAMRRPFTLSNEKDPKVKCEFVERPLPVCEKTAKR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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