NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0182086_1173473

Scaffold Ga0182086_1173473


Overview

Basic Information
Taxon OID3300020013 Open in IMG/M
Scaffold IDGa0182086_1173473 Open in IMG/M
Source Dataset NameMetatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041406CT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2613
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025997Metagenome / Metatranscriptome199Y
F043378Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0182086_11734731F043378N/ASKGLNNTILLPQQSSFSYKGNWIGVHNNSVMDKWHVGDFSSAIYQITVEFDSNEKEIMQLSVVARPDRAVASIFGRSSINQELVSINVTVDESICKVMVSPTSRTWTGAKLIYHATYARTIHQLTPPAIVADVSSEEASGINTFDATTTYFDNTNITFDKV
Ga0182086_11734733F025997AGGMAVINDKFQAQNGFESPNFSVDSTGKITAPVINVQSILLNGTPFVAYVPPEEVPGGGDDDGPVITNVFESLAVTGGTLRVSYLGQQAINVVNGVIKINSVGLLPGSIDHVDIGYIEPVQVKAYTIDMTTAPDSSASNINFNGAKLNVDLDIVDDVVLSRQPTQSGHATSKGYVDATATALAVAFGA
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