Basic Information | |
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Taxon OID | 3300020021 Open in IMG/M |
Scaffold ID | Ga0193726_1000014 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 573562 |
Total Scaffold Genes | 490 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 376 (76.73%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9871 | Long. (o) | -107.0011 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002209 | Metagenome / Metatranscriptome | 583 | Y |
F009744 | Metagenome / Metatranscriptome | 313 | Y |
F023536 | Metagenome / Metatranscriptome | 209 | Y |
F064945 | Metagenome / Metatranscriptome | 128 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193726_1000014119 | F023536 | GAG | MERQSSFLLILATAATFASLQARADNFVKVRYDKRTDRLIVTMVYGGTNPNHHFSLKWGECQANQAGDLSGVTAEVLDDQFEDRAQQDFTKTVHLSLAGMPCPRPASVTLRTAPRFFYTLTIPK |
Ga0193726_1000014273 | F002209 | GGAG | MNKITPRDFHNAFIAAMKSEEDGFRTAVGFEPKSYKYFMRSTIYPKIARHLGLSSWNKEYYTLDGMFYEERGVDATGKFASYANWVSVAIEHEIDTSQAQETMNKLQLFNAPLKVLITYALPGNATDSLLHKYEIIIKASDVFNDVATLRQQLVIIGKPKAVAEWRMYAYENDGFVLMLA |
Ga0193726_1000014287 | F064945 | GAGG | MQIPTDRKITESHAQFADAAQMAAFLASIPDADGLQSLLMKRKIVSTRTFDDDAMIARFVRSDGSSVACYTVEAVTIDEAEMIAAQCELLDDWNVESFSRAVHVALDPDL |
Ga0193726_1000014305 | F009744 | GGAGG | MAIQDYVRSIAATETVSKDQVFRFLEMQFARADTNHDGELDADELAAFVQAVARPEVDQR |
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