NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193726_1000017

Scaffold Ga0193726_1000017


Overview

Basic Information
Taxon OID3300020021 Open in IMG/M
Scaffold IDGa0193726_1000017 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)516687
Total Scaffold Genes473 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)387 (81.82%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015364Metagenome / Metatranscriptome255Y
F027959Metagenome / Metatranscriptome193N
F029492Metagenome / Metatranscriptome188Y
F033553Metagenome / Metatranscriptome177Y
F051299Metagenome / Metatranscriptome144N
F067943Metagenome / Metatranscriptome125Y
F071510Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0193726_100001710F033553GGAMGGTQRSAGGRCMARTARKSELGREPFRRLSDSEILLFVTRMLQPQLDDTDAPNVFAKLQSLKDVLRQQEMTLPDWLDCAGKDRMREALAVASDLIAQIVDDLAGAAKRDSAVGEAKSA
Ga0193726_1000017219F015364GGAGMPNPRNSKPPKQPNFLKRRTFAEGKAQVDAAHVATWRLYCEALAFWRRCSSAVCGRHRRCMGEPAGCLIRGLSRVPLAARLKAEQEVIAGGPRRIAPASHIEWTVRRSALATLTSWKLG
Ga0193726_1000017270F071510GAGGMLRMKQAGIGVAAALAASLWLTVGGGAAVAQSIPASGRYQCTGASGRMAELDFTVDSGNIYTTTKGFRGTMSIHPGTGNVLFHIAPPQASYQGRYSPGPPPQVVLLTVTGGASSEAGIVCQMR
Ga0193726_1000017331F027959GGAMPLALAEYLRHLATRCSRMSRDCNDPVTSKELVIISVELVEKAEALEAEYAIPHADDPRAAEITTRDDDDK
Ga0193726_1000017345F051299GGAGMFQHRASQFDPRVAAIAGHLRAIENELGSLGKSAGRRASSGVSNAGNQIVEAIWPILNEIGDSFRRGQGVALDQAASFGNEAVKRSAQMGSDALGQIADQAKRRPLITLAVAIGVGVLIGAVARRN
Ga0193726_1000017393F067943GAGGMPALNYVSQTQQSVSVTYTDLPAAANLAFIDQVSRAQTPAQSGALATGGDGSAEIPIPDLENGQYYLLAQVSGNYIAQTVPFYINK
Ga0193726_1000017459F029492GGAMNDKIQAAERNDQDLLAFEIADEALEAAAEKAKPAFTLIGSPTVSVLVACCG

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