Basic Information | |
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Taxon OID | 3300020021 Open in IMG/M |
Scaffold ID | Ga0193726_1000017 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 516687 |
Total Scaffold Genes | 473 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 387 (81.82%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9871 | Long. (o) | -107.0011 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F015364 | Metagenome / Metatranscriptome | 255 | Y |
F027959 | Metagenome / Metatranscriptome | 193 | N |
F029492 | Metagenome / Metatranscriptome | 188 | Y |
F033553 | Metagenome / Metatranscriptome | 177 | Y |
F051299 | Metagenome / Metatranscriptome | 144 | N |
F067943 | Metagenome / Metatranscriptome | 125 | Y |
F071510 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193726_100001710 | F033553 | GGA | MGGTQRSAGGRCMARTARKSELGREPFRRLSDSEILLFVTRMLQPQLDDTDAPNVFAKLQSLKDVLRQQEMTLPDWLDCAGKDRMREALAVASDLIAQIVDDLAGAAKRDSAVGEAKSA |
Ga0193726_1000017219 | F015364 | GGAG | MPNPRNSKPPKQPNFLKRRTFAEGKAQVDAAHVATWRLYCEALAFWRRCSSAVCGRHRRCMGEPAGCLIRGLSRVPLAARLKAEQEVIAGGPRRIAPASHIEWTVRRSALATLTSWKLG |
Ga0193726_1000017270 | F071510 | GAGG | MLRMKQAGIGVAAALAASLWLTVGGGAAVAQSIPASGRYQCTGASGRMAELDFTVDSGNIYTTTKGFRGTMSIHPGTGNVLFHIAPPQASYQGRYSPGPPPQVVLLTVTGGASSEAGIVCQMR |
Ga0193726_1000017331 | F027959 | GGA | MPLALAEYLRHLATRCSRMSRDCNDPVTSKELVIISVELVEKAEALEAEYAIPHADDPRAAEITTRDDDDK |
Ga0193726_1000017345 | F051299 | GGAG | MFQHRASQFDPRVAAIAGHLRAIENELGSLGKSAGRRASSGVSNAGNQIVEAIWPILNEIGDSFRRGQGVALDQAASFGNEAVKRSAQMGSDALGQIADQAKRRPLITLAVAIGVGVLIGAVARRN |
Ga0193726_1000017393 | F067943 | GAGG | MPALNYVSQTQQSVSVTYTDLPAAANLAFIDQVSRAQTPAQSGALATGGDGSAEIPIPDLENGQYYLLAQVSGNYIAQTVPFYINK |
Ga0193726_1000017459 | F029492 | GGA | MNDKIQAAERNDQDLLAFEIADEALEAAAEKAKPAFTLIGSPTVSVLVACCG |
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