Basic Information | |
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Taxon OID | 3300020021 Open in IMG/M |
Scaffold ID | Ga0193726_1000261 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 67037 |
Total Scaffold Genes | 49 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (77.55%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9871 | Long. (o) | -107.0011 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000151 | Metagenome / Metatranscriptome | 1897 | Y |
F000174 | Metagenome / Metatranscriptome | 1764 | Y |
F006431 | Metagenome / Metatranscriptome | 373 | Y |
F011326 | Metagenome / Metatranscriptome | 292 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193726_10002612 | F006431 | GGAGG | MSSLQNVSAEDLAKLFHHYHESLAPDFPGRASVEEACTWEQTPQNERKRMIAAARLTLLELGASSDGEPATRRYFAKPGEAEWGC |
Ga0193726_100026130 | F000151 | AGGGGG | MMNGWGQDNETVNKGLGGRHEQNVQEVVKTAHEELRQLMRQRADIMKRIGTIKQTIVGLANLFGGGILNEDLLELVDRKTSGRQPGFTRACRMVLMEAARPLGAREVCEQIQLKSPPVILHHKDPLASVTTVLNRLVEYGEAKSVIRENGRRAWRWVADPENGNLEPADEADGVSVRRDASYL |
Ga0193726_100026131 | F000174 | AGG | MKNVYEVLRQKELELARLEKEVEALRVAAPLLSEEKESVPEAVNSKPTLASPSPAQQPIRIPQPAVAAQPQQQARAAGWEDTAKRWP |
Ga0193726_10002619 | F011326 | N/A | MPGSEGISAATKPRRGTVIASGLLCGVLALVVIYTKRSAFYSLRAVVVVAAIGFAAVLLQLWLRNREKTPVVHPPIWLNVLGILFALAALFADTLKLSAQASQLMALGAVGSFAVSGALILDIFRKDRVARK |
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