NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193726_1000581

Scaffold Ga0193726_1000581


Overview

Basic Information
Taxon OID3300020021 Open in IMG/M
Scaffold IDGa0193726_1000581 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37344
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (80.49%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014458Metagenome / Metatranscriptome263Y
F034634Metagenome / Metatranscriptome174Y
F055867Metagenome / Metatranscriptome138Y
F069103Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0193726_100058115F055867AGGAGMHTHPPIDPDDPGGTSGEDVREPPLPGTQGTPREEFPRKGDLVDPEPAATNK
Ga0193726_100058117F069103AGGAMANLQSAWDSFLHIVSTSRSRSAVTLAAVSFAVCHLVVMGSGSSPAGITADLDVEIPRQLLHFGAVICRFALPLGFLVAGFATRTKTARISHRKR
Ga0193726_100058118F014458GGAMTNNFFTGVLAGLIGGIVGAYVLVHFDSRAVLSPALASATRPQNVISANRIQLVDAGGKVRAELAMSVDGGPSLFFFDTAGRNRMVLGLYSPAEGEAPTVVLNDAQQHAAGIFRLFGAHDTPVIVLKSQGRDRSVYGLNPTSMDPFLANYAVDGKKTDFFGSY
Ga0193726_100058132F034634GGAGMSPSTYLIDGLFGLTAISSLAGFVFHLLTGNPDMALLCFVGIGGSAAVGWMFTTCRRA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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