Scaffold Ga0193726_1082203

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193726_1082203

Scaffold Ga0193726_1082203

Overview

Basic Information
Taxon OID	3300020021 Open in IMG/M
Scaffold ID	Ga0193726_1082203 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1484
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9871	Long. (^o)	-107.0011	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000151	Metagenome / Metatranscriptome	1897	Y
F013651	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_10822032	F000151	GGAGG	MESAAARKNETESKDLPGRGDLNVQIVVKTAEEELRLLMKRIGTIKQTIFGLVKLFGPGILSEELPEFFASQPTGGQPGFTRACRMVLMEAGVPLAAREVCDQIQQRTPVLRHHKDPLASVTTVLNRLVDYGEARSLVRENGRRAWQWVSDQGESPPSHLE
Ga0193726_10822033	F013651	GGAGG	MRSLWSLCLLPAVMLIPVPLPSQNVNPMHPQEIDLQKHASPDEMRARVANVQLQNDAKELAGLCASIPGDMDAIKQGLLSTAVLEKLKRVEKLS

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