Scaffold Ga0193733_1000056

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193733_1000056

Scaffold Ga0193733_1000056

Overview

Basic Information
Taxon OID	3300020022 Open in IMG/M
Scaffold ID	Ga0193733_1000056 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	43788
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (65.62%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9223	Long. (^o)	-106.9536	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002873	Metagenome / Metatranscriptome	524	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193733_100005617	F002873	AGG	MFKRLMILGIAGLTFVLGANYLLVYTLNQQVTRERERQDRTYWSAFNAVEQFGERADKVTEQKAKAALDEARQKGLSKIRARILQSYFEDLERCYQGDRESCKKANTDMNEAIRIPAERK

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