NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1000195

Scaffold Ga0207193_1000195


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1000195 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)109190
Total Scaffold Genes171 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)117 (68.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F002502Metagenome / Metatranscriptome553Y
F029107Metagenome / Metatranscriptome189Y
F057778Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_1000195120F029107AGGMATTHAVVTLSNSTATRLTPNGLHTGTDITVQNLHDSAYVYLGGEGVTSSSFGYRLAPGAAWSVELSGPSPLYAITATNGSTVAILKTSLEAGN
Ga0207193_1000195140F002502GGAMSNATLTVGSQFTTAKSGVSGTIQEIVKNANGTSRVRLDVNGQPRWTTVVK
Ga0207193_1000195142F057778AGGAMDEQAEEIKENLADYYANPEEYTLEDFEEIFQDRDPFEFL
Ga0207193_100019555F000264GGAMSNKMYTNEAWLKKRYWLDKKTPEAIAKECGVAVETIYVYLAKFKLRKSRR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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