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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020048 Open in IMG/M |
| Scaffold ID | Ga0207193_1001703 Open in IMG/M |
| Source Dataset Name | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Minnesota - Twin Cities |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 39277 |
| Total Scaffold Genes | 60 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (66.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Manganika, Minnesota, USA | |||||||
| Coordinates | Lat. (o) | 47.489552 | Long. (o) | -92.573009 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000324 | Metagenome / Metatranscriptome | 1299 | Y |
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F001991 | Metagenome / Metatranscriptome | 607 | Y |
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| F012668 | Metagenome / Metatranscriptome | 278 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207193_100170338 | F001991 | GGA | MAIFNKNTLTQVSGFDNPIIAGELVYSQQTFWNLAFSNENVAVDLTGATIDAQIIRRQLSDIKDSRYGLTFDISDYTPPPSPVALTITNRDDAGGLFTLVIDESAWGVISSDPQLDINAQVCVGFSGRIKISFPAVGSTPAQDNIIFLLFLVRSDGVVN |
| Ga0207193_100170339 | F000324 | AGG | VTIRVRPAHSFTYDGAIVNVFHANKGEGLPKHEHVYSHATFCAAGSCIVRKEGKEVVVVKQTQPLNLKGNEWHEIEALEDGTVFINVFSEDKR |
| Ga0207193_100170344 | F002085 | GAGG | MNVIAPVENTNNIRYAQFVRVTTADEVFRFATTPAPITVASVDAAPFDAVGVLMKIGDAQKDIKSTANETAFTLIGIDTAMLGWVLGLNVKGSKIEAWNGFFNTDGELITGGGDGGLYKFFTGYVSSFSISEEWLEELRQFVGTITVSASSIQLILQNRTAGRYTNNNSWQFFNSGDTSMNRVSFVSTINYYFGKDR |
| Ga0207193_100170345 | F000934 | AGTAGG | MSLNTILAISESVGINDQRFVGQMLSRNQRISTSEILTVVPFAFTMKPMNYLLYSENRDLLSDLRYYDKSLTQYLNFGTTGWINYIEYQSDMTSGQISACQWQTASANKTLVLGSLPSISSSAYIVRKGDFCQVGLYSYIATSDVQRGSGSTVNIPVHRNLLTAVASPINAVIGQYGTTVSMGGSSYIGTTFPVILREYPTYSLMPITNDSFIQWSGNFVAFEAVL |
| Ga0207193_100170353 | F012668 | N/A | MAITRYENISINNVTNGINSIGEYTTTIAKWFDTRALVSDVVNSLRISDRYRSYSDIVNLTVNYTPNTKEIVNNQNLYSITYRGFDWRIGDVRESNDRMKVTFMCYRNDPVVPV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |