Scaffold Ga0207193

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1004029 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020048 Open in IMG/M

Scaffold ID

Ga0207193_1004029 Open in IMG/M

Source Dataset Name

Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Minnesota - Twin Cities

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24228
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (81.40%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

24228

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (81.40%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Manganika, Minnesota, USA

Coordinates

Lat. (^o)

47.489552

Long. (^o)

-92.573009

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_100402911	F001059	AGG	MASYDIEALKTDLPTAKDLAQFVYDKVGISLDLVGKPKEDQYMVARNALEGKKVPENFLTDLNPYIDRKELIPVDEKKKVPPRPADLPDPSSQVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVTGPIEQIAVGERINKFGQKQPEKYSWLDPRTEEIMLRRPDGTFTEKGRGLYAFCVGEKGGGIWTLIDRNLMNIAEKNVTNPWA
Ga0207193_100402912	F040590	N/A	MSYGKVISGGKAMSNGLTKGINNKLKSFEDGHKRSQTLATAVGKAFNQNPLSDNHLNNINVAAAKKFTTPKLPTNV
Ga0207193_100402913	F099270	AGG	MSTNFQYAQAPNRKGNMSKHTAMHSGGATADCGPKHGMSGPTGQQGAPKATGNIASRNQKVQVSTHADYCGSCKNDGYMNKSVKNYLG
Ga0207193_100402915	F001915	AGG	MWTLAHPLHDVDDIVELADSVFGQETDGILTRDRNVFRKNVTITATTQLFDKGREFLAVCRQKQEYERVVVDGFVDYICKEPKLLGYCWFDRGGYTTYANEEISNAKFHHVDLSLPAKQRVRLINEMIDQHILWANSWGIPVICSTSIRAEHDGFMKIHKKRGFKVNGSYAWIRTEEAMKGLK
Ga0207193_10040293	F005087	AGGA	MALFIQSANTLVSRIANWVGAIPSSVGINATAYDTTTKVITCSANPTSVVSVGDFIGFSVMGPYALAVSVTSTTITVNDPEGIWDDAVVPTAIIKVPTQSTIEITQSIQMAELKMRTIELPALRSNPYDDLEPAHLTTDAKGMAPIPADMCFPILFFQESQPTNEEYDGTNLGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGPNYVFTPNPGENVTIKAYYQRVFPFLFSSTADVEYPVVQSNAILASFPEGYFYGTLWAYYDKNKNTEEAQKWLSRFDDSYGLIEDQNYKGKWRGGDQHLTSEFQPRNYRYSFK
Ga0207193_10040294	F000857	GGAG	MTDDEVKINEEYYSKGILEAGVDGVFRHNDKLFNEVKSGTWSQTFKTDNIDYKVGAIDGNRYVQYEQKNVENVREFCKQQREFYKTHGTDNPFFAGTAHMMQLPKCFAHEISSKWFNNRPWELIKQDKKDKILFYAIVNEYYSDFVCHPSGKIPIPYNPAIPTK
Ga0207193_10040297	F003521	AGGA	MKSLVYRIREYFNKRTKSADSSKGADVHRKTLAIENGECASRLIKNEDFALLFNLYRFNLLERLEDCRTDPERIENAFNVAGVRDFIGFIEKIEYLGKVAQKSNT
Ga0207193_10040298	F004695	AGGA	MLDRQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEQDSAQANQATEMVKYMINSKNDSYACIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTRDQLRVFETMAAEKGLTVKRQNMRKIDVDLEGVMQEMMNPDDDQGTMQEEVNEAIAANTVYRAKYKMTGFSTSVRIKHVAQHYFVCNPTIPGIQDQDFVGFYDPMTIHECKAQYPYVDLEKLATHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWIRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLAAMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQSSTPRIGVNPEFMDAEEIQRGVSAMFILDRKFDPAKHIYEFAPMQGNLAYVQSSMQRFEADKMAMIGMTSPNDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDMIYIVWKTLIQYSDDYNIQQLAGVCGKGAPFMDAISMENYEFIDRKLINIDLALGFLSDENRLTRQQLIGQAQQQFTQAMMGLDPSVPELFAKLRRPFEDTLRVLGVKDVDAYLPTLEEAAKIMQAQASKGPSAEQQKIQSETDLNKAKIEDTMANTMFTQKKAEDIDTDNMFEALAAKRGKHSSVQVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207193_1004029

Overview

Ecosystem & Geography

Associated Families

Sequences