Scaffold Ga0207193

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1022766 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020048 Open in IMG/M

Scaffold ID

Ga0207193_1022766 Open in IMG/M

Source Dataset Name

Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Minnesota - Twin Cities

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7717
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (35.29%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7717

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (35.29%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Manganika, Minnesota, USA

Coordinates

Lat. (^o)

47.489552

Long. (^o)

-92.573009

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001561	Metagenome / Metatranscriptome	670	Y
F007310	Metagenome	353	Y
F008494	Metagenome / Metatranscriptome	332	N
F008552	Metagenome	331	Y
F013084	Metagenome	274	Y
F024557	Metagenome	205	Y
F070110	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_102276610	F001561	N/A	MQTPEQKLKQLNKTIETLWHGVSDTKDGDYPRIVSLYKEVLKINYKDRDAWENMIWLMWSLAVNNKDTAWLFEAEKYVKRYLSLLPNGYRSHEYIGQFYRTMYIDERLAVRHYESAIRYQDATPSTYHSLIALCIKINDKVKARDYCVLALRRFKNDSYSTMRLKQLDAR
Ga0207193_102276611	F008494	GAGG	MNKEQAITSFMKAVKTYTTSIDKTAQTNIEYKKAVYALEDAVNQIYRVVDVKELGSNAEQRNAKISAQTAELITAKRELEYQLEVARAEESRAKTECDQIKYIIRALEVKDEA
Ga0207193_102276614	F070110	N/A	MFLDDFPIVIWFVRKSRNSYLLFDSANQLVMRRDEKRKKEIYQYCADNGIEVQDEF
Ga0207193_102276615	F013084	N/A	MGIMNVLGMMQEAREVATSRGHNVKNWDVLGGDCYLLECKDCKMQVMVKEYPLPNEIQLGGEAIALDCVKPEKKKLSKKT
Ga0207193_102276616	F007310	AGTAG	MRTVLWNDTERWFNHHHYEFLIQDITGFNLXXXPYHRAFRSKYSVYQDEYKSLVEKFNHQADNNGRIVVQNEKVEAFC
Ga0207193_10227668	F008552	N/A	MIISFEASANVDTTLFGYFSMQYDPEFFNDIKENLTEISKEDTLSFKLDPEEVKLLQGSYENVKRIISISDVEQNKFTNVFKRKFDTSGFKKFKNVKLHIDKDYFYFTGHHENLNGTKPVEFQSLNFDVRFIETLEHKYKSMVN
Ga0207193_10227669	F024557	N/A	MNSHVWIYFSKTGVGYELVGTDVISGMDAFIHGVDTYLVEYSHSDLMNDMHFFIYEWDNSQKKRKTVYESYKKELVLMGMVKHMDKMPLPISQKILSMYVSDEEDLVLEKNANS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207193_1022766

Overview

Ecosystem & Geography

Associated Families

Sequences