Scaffold Ga0207193

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1032462 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020048 Open in IMG/M

Scaffold ID

Ga0207193_1032462 Open in IMG/M

Source Dataset Name

Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Minnesota - Twin Cities

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5978
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (22.22%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5978

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (22.22%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Manganika, Minnesota, USA

Coordinates

Lat. (^o)

47.489552

Long. (^o)

-92.573009

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F058819	Metagenome / Metatranscriptome	134	N
F060725	Metagenome	132	N
F073276	Metagenome / Metatranscriptome	120	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_10324624	F060725	N/A	MIKLFIGGQEVDLNQNEVNVTIDYSIENIDLGNISGAHSKRNVTLPATKTNVNIFQNITDAGAIVTNAYKLLSARLEADGVPILTGKARLEGADLQAINSGFVASNFKVSLIGNNADWFSDVGNILVRDLGWSTIEVSETTVKENYNPLTAEYCFILMKWKAWENETFIVNNEMTPAIFIWQILEKAFANKGYQLNSIFKTDPFNRLIIPMGLELGADYLKNFVNLRASIPSPGVFNDFTPSPILITFTDETTSPNFDTGGNYVSGVYTVPITATYTLKAELNILITFLIPTPTSELLIGWEINGVFEEGEDLSQEADFDDSVSIEFITDLVEGDLVRFVVIHNQPGFTMNLNGSIEIIGSKAIFEAGRTFDLQYVIPITWYVRDVISDLTTIFNLAWETNVQSKQVYAYPKDDYTIRYRADATGAISLTSFDGFFKASDKYDLNTRDLDGSEFQILDGYKSSEVLAYATDDDTTNKEEERRGVNIYSGGYNFPTDRFDNGVEFIYTKFFAKAIHINDVEITSGGTYGAQMPLVFGDDYNTVTDAEPNYNLAPRLLYYAGRRGGLDGYVRLYDETSSASSAFDFPAAFMVNYNDPSGADFNLSFSDEVTNYTNVMQGVFKTFHLQTYKRIELGKVYTTFAKWKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNTNDLTKVVNTITLAGASPQSGTVTGSGSGLVGANGATVNIQLSYTPFLNSMTNVLVLAPNSGITQVSNTNANVLVFMNGQKLIPTVQYIIGGSTIGINVDTHFDGANYEVVVNGVTKG
Ga0207193_10324625	F058819	N/A	LHWFGKYGGAESYQFRGLIVDLQTANADIINISQPWNVAASPRANSFDKTIIKTNQRVNKRKQVKCNIPHEDAVYIASMFYSPEVYIIENGKYVNVTISNAETLTDNNRTTDIEISFEITYPNKPTAQL
Ga0207193_10324628	F073276	N/A	MSLVQLANIFEAATDAVNGLNGFSFGWASDRVRSQIYTEEGENSTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYDENGDVDTTLQITKWSNLIAFAERFILELGTTKTTNSIPDQVNLVLDSFTSIQRLITVQATFSISIKSEC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207193_1032462

Overview

Ecosystem & Geography

Associated Families

Sequences