NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1042394

Scaffold Ga0207193_1042394


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1042394 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4949
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001477Metagenome / Metatranscriptome687Y
F003212Metagenome / Metatranscriptome500Y
F003863Metagenome464Y
F018135Metagenome236Y
F038999Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_10423941F038999GGAGMTHQGDHFQGCTIECKPAKLSFPCSCNGCRNYPTRPAEVWHESQIASKAQGYFFTPDTMRFFKSRIADFKPVGISPRGVDSLMVIVSNKRDDDPRYYEIVTLCPYGELGREWSTDSDGSPITSYESLSKARKSARWNCTISPQLCECHGCQLDKAGR
Ga0207193_104239411F001477GAGGMSNIYTIHPKKSELILFYEVVTQEGENEWGGASAEHCIQWLSLAPSGSRVLVSAWDSDEEDAHLVGQTIDITEIIQQAREVGL
Ga0207193_104239412F003863GGAGGMESKQVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKTWVINTDSRLTVGIHTRANNTPAFGDPADAGADEGYDGGEA
Ga0207193_10423945F018135AGGCGGMTVERVRHSGAYVLSDLVGEGGGSYLFTRTYYGYTLKQAKAQFRLALESEGE
Ga0207193_10423948F003212GGAGMKDKWLVTIEIDTYDGDPRWWDWDYIFTSGDDVKVISSDFKGRVLPTNEGENE
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