Scaffold Ga0207193_1043086

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207193_1043086

Scaffold Ga0207193_1043086

Overview

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1043086 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4892
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F040629	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_104308612	F040629	N/A	MNKYSIKIEITAEVEAFDEEDAREYVSDIFGVDDEVKSVKILTVKQKS
Ga0207193_10430867	F000671	GAGG	MSEKIFCYSCNKTKNKLNLKRSSLLTINLFLCQTCIDNKFEPRWVVLIAGRQNGHETVKDFIQKKRYIGVEITASELLV
Ga0207193_10430869	F000473	N/A	MFIKQKTSGSRLEQNKMSNVYDDKHFKYGMNQWTGEPNKPVFYNADMKKKLRELNKPMFLLMDVVQYPEFLALRLYEDNFIQFDGIEKERVIDYVSKAKKLLESYGVRVELEGKPHG

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