NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1052320

Scaffold Ga0207193_1052320


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1052320 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4248
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F010248Metagenome / Metatranscriptome306Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y
F017101Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_105232010F000473GAGGMFIDKSNERLKEHFKYGINQWTGEPNKPVFYTEEMKKAVHQVKKPALLLMDIVMYPDFLALRLYEDNFLQFDGTKKEMVIDYVTKVKRLLESYGVRCELEGRPSDRVL
Ga0207193_105232012F013878N/AMLNLTELGVEVFIKKAKNITPYWDNYDLVIWRKDNGGFTNIKGMFRENAWGTAERIAVTDNGIWKLPTKYVRNFK
Ga0207193_10523202F017101AGGAGMDNTEKRMSVLESIIQDVAKALFQKWANALPEDQRSEENLANLNKNATESTYFVVKMFMDQFNAAAEELKAQPDEDQ
Ga0207193_10523204F010248GAGMRKSERIRLLEMEMLRMQFQIEYLNTAVKLLLEENKVTGPDMDAGKWYAAKLNKNK
Ga0207193_10523208F000671GAGGMEKILCYSCNKSKNKLDVRKSSLMPINLLICETCNSAKLEPRWVVILAGRSNGPDHVKEFIIKRRYLGNEITASELLI
Ga0207193_10523209F011938GGAGGVIEYYDTTHIVYIYAEQCYGTVEKLGAWASTVKYNKDEIEYNELMENDEFTIVDEIVFKHIEESN
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