NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207193_1057014

Scaffold Ga0207193_1057014


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1057014 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3992
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Associated Families10

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F003603Metagenome / Metatranscriptome477Y
F007468Metagenome / Metatranscriptome350Y
F013184Metagenome / Metatranscriptome273Y
F034924Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_105701410F007468GGAGGLTTQTKSSKFIEYMKIHLISLNQDLEADYNVQSKINIQGQIMATEHLLSVATDIMNNSNERYE
Ga0207193_105701411F001460GGAGMLGYTESDLNRMINAVHDVKLFYLRSPSDLMNKDPLVKDLEDAVSFMQGLWAEGYFDHTN
Ga0207193_105701412F013184GAGGLNSYNFVIKLAGSVLAKNEKEAHAKINAHLDDLGDVDSSRYDLGWPEVSWDMEYDLC
Ga0207193_105701413F002387AGGAGGMASFLEDVNQMVIDAVYSDIAEQLLEQWINNNLDEGQYYADKQFAEMSGDKFIYAEFNKFYELKEGDEDYLEFL
Ga0207193_10570143F003603AGGCGGMKTKEQQIGELLANSVEDHFFNPAALGRYLAEQPIYTLDRIVEVVAWIIEKQAERYRREVSNNGTVSEGLIISNMLDQMIDKIKVTNDLKSVKLPITPKERGEFIKSLPETKEQNYRYSWLHDTDNRTKVTIDHPFI
Ga0207193_10570144F000852AGGAMATKREYLKSKGITVGARGRFSSAAKQALQEATTNGVTFEAEKPTPKK
Ga0207193_10570145F034924GAGGLPIYRVFGTKYQNYYTIVSAADEYQAAEIANLRPSTDWDSIPTDDEIEATDVFLDEDTEIDLQVNM
Ga0207193_10570146F001019AGGGGGMTHYEPSLEILEVAYDCSPGGIRTFEVYDKGDNMVIMDMPIYETDSLTKAVQYCYNLDKDFIVRTYAEWEMRELIADI
Ga0207193_10570147F000441AGGAGGMKMSDPYINDQLNKAQKLLWGGSETENIEAHNIIAKLIKDRMEGDEGENDSL
Ga0207193_10570149F000263AGGMTISDDMFTDKESLVLPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQELADAIEREEETEEAMDSMDRTNAEGRLDMLVELYQLTYQLSFAIGARTL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.