NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1057711

Scaffold Ga0207193_1057711


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1057711 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3958
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066572Metagenome126N
F070996Metagenome122N
F083629Metagenome112N
F086810Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_105771110F083629GGAMRHTNLPNHFYVQVDNQYLGPNMPAGTTPGMWHAIYARPGQYLSCHVILASGAHWSGLPLHALSTTESFDPDFDDSSQPWGAMGNNIEAVQFKALEGLTVNAFRAETSGIHTGIVIDWADGYSRYPAEHKPLSLIIADEGWFLLLPNNYFTVKDKHFVDTKKYVDQMKFYKRGDLVYW
Ga0207193_10577112F070996GGTGGVTKQIMQIDVLSEWVTDDRAAEYLSEHVVTATLEVHWQHHKPGHYTGVQGWELISWNILEIALDDVELTDQDIVPSDFPMVEVRAALEDAEPVRKYIAARPPEDA
Ga0207193_10577116F066572GGAMEEMWPKWKLEPVLSSLLNEKWGSLHQDKLQACIRQHRLVRDFKPEIAAIHKAYCALIPQNLVGEREVEQTRNDLQRCTPISTEEFAEWDVWAEAMLKNVSDAELEQVREFIGHVPESRRILAVAVEHVRKPSVRYA
Ga0207193_10577118F086810GAGMYLRHEGFTVGQTKTGFVAVDDDGIVIQATPYRTSAQVFHPTLKIYREEYALSIQETYWFAEKLPLLTEWAKDPNAKEPGRVLSISRRPVPSRQGTA
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