NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1127771

Scaffold Ga0207193_1127771


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1127771 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2208
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F001043Metagenome / Metatranscriptome794Y
F034472Metagenome / Metatranscriptome174N
F036238Metagenome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0207193_11277711F000980GGAMSVGPGTILFMTNELVSTKYTFACDPDECDVLIELTSSDGFGFPSGVTEITCPCGRKPVLLSVVNATIAPITQTKEEKMEESTNAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVTSIEWDLHNARQAQKQNGVYQDKINTVKDIITEAYADSDDQDTLRAIAEALGIELVREVLFTATLEVSGTYTYNVLDSDYDLDLDSEVTDALYADSNNGNITIDDTEVCHVREA
Ga0207193_11277713F001043GGAGMSDYRDGFDDGYKFAREEIIEKLSEIDIADIDSWILDRLSEMMEGGSL
Ga0207193_11277715F036238AGGCGGMGDRANFGFRQSNGETIVLYGHWAGHDMLGNLASAVEAARSRWTDESYATRICVSHLVGDQWHDTTGWGLTVNGILDNEHKIPLIDWSTGTFSLHEEAPWSESTEYKVRGMQDEPMFTMTLDSFINKYSRATV
Ga0207193_11277716F034472AGGAMPNWCYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISTMGFPTKIE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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