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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020048 Open in IMG/M |
| Scaffold ID | Ga0207193_1170935 Open in IMG/M |
| Source Dataset Name | Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Minnesota - Twin Cities |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1776 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Manganika, Minnesota, USA | |||||||
| Coordinates | Lat. (o) | 47.489552 | Long. (o) | -92.573009 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F001229 | Metagenome / Metatranscriptome | 741 | Y |
| F001900 | Metagenome / Metatranscriptome | 620 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207193_11709351 | F001229 | N/A | DSVLSMNLDVYRQSEIQDPDTGAIIREWNYYKTIACHAKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTSEKLTAREKVTNIRDVEGNTIWNEINYPNETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ |
| Ga0207193_11709352 | F001900 | GGAG | LDNSGLLVQVASGLERMMYANQSGPLKDSTVAQVSAYVYYEAAVISKLTTNKPFQHAFTKIMFDQINTDFGNYIDALARTKPKSLHHVYEWKKTGNKTARLFKLNNISEQGLSFRINYQLLPSRSMVPAPKGKRRHMFVNKAEVMEQGNPLVIRPKNAERLVFEYNGETVFMPKGAAVTVKRPGGSAARNQFSLAHSRFFSGRLVNESIKRSGFQRIFNSSMTKALKVPADIKKVQYSFSPNTIRSQADAALSAAFGGAM |
| Ga0207193_11709353 | F000258 | GGAGG | VTANYKLDAMLELRKYLWKELYTRNIFDEDDYWSDNLNENIVPIIPVQQSAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTLYSTSVADINEIRNYMTDEFRRMDESARDINKWTGLSDKFKFHSIWVADISPTAPSEELQGFFSAEVILEIKYSRITDGQGRFL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |