NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181554_1025812

Scaffold Ga0181554_1025812


Overview

Basic Information
Taxon OID3300020052 Open in IMG/M
Scaffold IDGa0181554_1025812 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011503CT metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3566
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007167Metagenome / Metatranscriptome356N
F042805Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0181554_10258124F007167N/AMEVKDAVFGFYLSPSSAVYIPKEGTETKKMKDGTIIKVPKYMYHPLTIEIMPRADYKTIQHPKRKKFLFSMRETKPVPADIRKYIENPEPEKLREALVVIQRRIRQMFETPVQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWVTTTTKRLGNPWDLKNKVERDRKKAELFNVISNLLEDKDKIPYVSRMLIDRFR
Ga0181554_10258125F042805AGGMKVTFPGWLGWFEEETLEDKDKVSIIENCFMEIKDVYAEKLLWPSIYMEEDGYDSEDDLEMIWHYSEAQSYLEEYLEKNGYNRDYYHIMHVEATFHEPGKEPRKLKFYVKEITCEIRHPGGNCPDEMFKWWVCEDKYGDFDEYINDIPDENYRIFLYCLNKAWQDVKALPECITKLID
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