NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181574_10195592

Scaffold Ga0181574_10195592


Overview

Basic Information
Taxon OID3300020056 Open in IMG/M
Scaffold IDGa0181574_10195592 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101410AT metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1300
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000724Metagenome / Metatranscriptome919Y
F015099Metagenome / Metatranscriptome257N

Sequences

Protein IDFamilyRBSSequence
Ga0181574_101955921F000724N/AGPTGPWVWHVWTKGSKKPLRMVAFDHQHIKDQLEGRQMVKAVKQPEEEDDFKDSPPLGPKGYKGSSRPADYDAGFKILRDWVDKNGGPPEEIRQRLRELWIDYEKPSKKQGKK
Ga0181574_101955923F015099AGGAGGMSHTSKNYQVIYRYKDSLSGCFVWAPDEAQAEKKFKARKEFEYDPQYDRDPEEGNIRSIYEYVAPEPKKLSSKMCELEQFVKYPQFYPFLKKYDAGSEKALAKQIPLTQDNIAIIDAIAKVIPITMRYRGP
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