Scaffold Ga0180113_1036949

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0180113_1036949

Scaffold Ga0180113_1036949

Overview

Basic Information
Taxon OID	3300020065 Open in IMG/M
Scaffold ID	Ga0180113_1036949 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1296
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9231	Long. (^o)	-106.9513	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082880	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0180113_10369494	F082880	AGG	MNGQKLERAIELGKRVEHFFLALIGVDGFPHVNSGREIEQVAENQFAIEEWICPLTLKHLSENPKMAVLIWDPSSDDGYEILGEVLMLESKAFLNGFAPEVEGDAHLPQVKRKLIIRAEKITAFSHALRCDDIQQLAEAKGTARLFTGEDSGSEVPVCGFAPEWAEHARFGRSDEPCDDGRAGGSLRETTP

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