Basic Information | |
---|---|
Taxon OID | 3300020065 Open in IMG/M |
Scaffold ID | Ga0180113_1081105 Open in IMG/M |
Source Dataset Name | Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1026 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9231 | Long. (o) | -106.9513 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F018206 | Metagenome / Metatranscriptome | 236 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0180113_10811052 | F018206 | N/A | AIVSRWKSLQRKAKRMTEEGTLGILMLENTYKVRYASNNPHSMDRQHYKCTDEEELGAFLQQLEIDEWYIEQAFAELWKGRFAALPIALSAEQIQEYFVL |
⦗Top⦘ |