NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180109_1038730

Scaffold Ga0180109_1038730


Overview

Basic Information
Taxon OID3300020067 Open in IMG/M
Scaffold IDGa0180109_1038730 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT47_16_1Ra (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)577
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9516Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017105Metagenome / Metatranscriptome242Y
F029804Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0180109_10387301F029804N/AMQFARVYYSPKDSATQVEAGDLFFAHGRPLLVIKWRRKNGERVPEECVELDPAKLRRASSNGTIYRYEGKVRPASP
Ga0180109_10387302F017105N/ATLAALGGLAFGLRHFFIFLKEKNKNRLQEKKLEVWEGEGGAVPVAATRTAAQVRPQKPSSASSSGVN

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