NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194113_10003477

Scaffold Ga0194113_10003477


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10003477 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21098
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056992Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0194113_100034778F056992N/AMNPSSLKLVCQYVDSDRAEVVDARATGGEVIRIPFRQMVLPTQALAVLADNLAWFMEQVTGRGYQKAEEVYDTGFTVREPGRNAYGLKVTAEGPVVIIARVSLLEDETIFQRYVNYLRTGVLL
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