NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194113_10049266

Scaffold Ga0194113_10049266


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10049266 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4106
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000671Metagenome / Metatranscriptome945Y
F010248Metagenome / Metatranscriptome306Y
F011938Metagenome / Metatranscriptome285Y
F017101Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0194113_1004926610F000671AGGAGMEKILCYSCNKTKNRLDVKRSSLLPINLFICETCYSSKFEPRWVIILAGRSQGPDYVKEHIVRRRYVGNEISASELLV
Ga0194113_1004926611F011938N/AEYYDTVHVVFIHEENCHGTVEQLGAWASIVKYNKDGMEYNELMENENFSIIDEIVFKHIEESE
Ga0194113_100492664F017101AGAAGGVQEKMNILESIVQDVAKALFEKWANALPEDQRSEDVIANLSKNSTESTYFVVQMFMEKFNQAAEELKSQPDE
Ga0194113_100492666F010248N/AVTKSERIRLLEMEVVRLQFQIEYVSKAIETLLAENKLAGPELDAGKWYKSKLDKDK
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