NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206355_1037115

Scaffold Ga0206355_1037115


Overview

Basic Information
Taxon OID3300020076 Open in IMG/M
Scaffold IDGa0206355_1037115 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)790
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018459Metagenome / Metatranscriptome235Y
F022547Metagenome / Metatranscriptome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0206355_10371151F018459N/AAMEEYDELNTFEKGESWPTKVESWPTIQEIERRLRKLGCTKEQVKRHLDQVAMSRTEAAREKSNPRSKGR
Ga0206355_10371153F022547N/ALRILRRDGTSKLLLGLTSIPPKIGAIKTIKVTRDETVKVRVVDHPRRDEPAEAIEV

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