Basic Information | |
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Taxon OID | 3300020080 Open in IMG/M |
Scaffold ID | Ga0206350_10824538 Open in IMG/M |
Source Dataset Name | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1187 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001698 | Metagenome / Metatranscriptome | 650 | Y |
F006575 | Metagenome / Metatranscriptome | 370 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0206350_108245381 | F006575 | N/A | LATATSESATATSPYLSLRRAVRPAILAHRLLAGDQERAGMLAAECEDLLYLTRELLKAAGRARILAVVPGPRMPDESGGDRQAQLCEAYADAGLLWAKVVGSSLALAEALIERGEWEDVRALAGFLAGAGEESAATELRIRLGGAVWEAHREQLRAISNDMPPAAIELAINALRAILREVPEEFPDRNREVNCFLPPLASAVYAIMQIQRAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFDGICRRPGGLTT |
Ga0206350_108245382 | F001698 | AGGAG | MAGVVNDIEALAEFRAHLMRFNHDLAENFATIQGHWRELGEIWRDDMYRLFGEALEEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAGAGLGIGRPPEVRGGMAGGTGQGTARRDRNSR |
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